PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029947-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 455aa    MW: 52437 Da    PI: 6.9182
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029947-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2337132190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                            +fY++Y++  GF +r+s+ +k  ++g+i    f C++eg + ++++k      ++++rr++++tr gCka++kv++++ dgk++vt++
  SMil_00029947-RA_Salv  37 EFYKKYGSASGFGTRRSSARKG-KHGQILYTYFICTREGVKPKSQEKvtesstRKTKRRRKPSTRNGCKATIKVNLRDdDGKYVVTRF 123
                            6****************99998.6677**************999999999998889999*******************9********* PP

                   FAR1  82 eleHnHela 90 
                            ++ HnHel+
  SMil_00029947-RA_Salv 124 DESHNHELV 132
                            *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-2137132IPR004330FAR1 DNA binding domain
PfamPF105518.3E-8254294IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDNPDSECGA KSYLPVCESS KKPYIGQLFT SVDDAYEFYK KYGSASGFGT RRSSARKGKH  60
GQILYTYFIC TREGVKPKSQ EKVTESSTRK TKRRRKPSTR NGCKATIKVN LRDDDGKYVV  120
TRFDESHNHE LVSDECRPFM KQNRKIDQSH QVIMLSCAKA NIGPMRAFRI FKELVGGYDD  180
VGCTSKDFKN ASYDLNSHAD GFDAQLLLDR FISKRECDDG FKCKYLTDEF DKVKSLFWCD  240
SIGVQNYSVF GDAVSFDATY STNRYDMIFT PFTGKDNHGG CVTFAAGLLN KEDVNFDEPD  300
DFEKKWAEVL DEYELEDHTW FQDMFSKRTY WIPAYFRELS MSGLFRTTSL SESENSFFRK  360
YLNRTSNLAA FYIHFESAMD AQRQTFKQLC MVDQTTVPHI ETHIPLEQHA AVIYTRKKFL  420
EVQIEIMEAV NRCCIKTMDT DDGEHRMPSI APTAQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-32FAR1-related sequence 5